[Bioperl-l] Gene Features

Nathan Haigh n.haigh at sheffield.ac.uk
Mon Jul 11 11:50:13 EDT 2005

I'm working on Arabidopsis thaliana and I'd like to identify candidate genes
based on their gene features. In particular I'd like to identify genes with
introns within a specific range.

I have obtained a file from TIGR describing gene features:



I wondered if anyone might have some code for doing this type of thing?
Would the use of Bio::SeqFeature be overkill and can it be used without
actually having the gene sequences?





Nathan Haigh

Bioinformatics PostDoctoral Research Associate


Room B2 211

Department of Animal and Plant Sciences

University of Sheffield

Western Bank


S10 2TN


Tel: +44 (0)114 22 20112

Mob: +44 (0)7742 533 569

Fax: +44 (0)114 22 20002


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