[Bioperl-l] Newbie gbrowse help - script to make gff from fasta
jim.hu.biobio at gmail.com
Sat Jul 30 16:05:42 EDT 2005
1) Is there an existing script to convert a refseq fasta into a gff
flatfile compatible with gbrowse 1.62?
bp_genbank2gff.pl --accession NC_001416 --stdout > lambda.gff
requires some additional tweaking/parsing as far as I can tell. I
know that I'll probably eventually load these into mySQL (but for
phage genomes, is it worth it?), but I wanted to learn via the
2) Is there a repository of standard track stanzas and aggregators
that match the feature types generated by such scripts?
3) Is there a FAQ I missed that I should have consulted first?
4) Is this even the right listserv for these questions?
Didn't want to reinvent any wheels if possible. Sorry if this is off
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