[Bioperl-l] how to use bioperl to do Z-scores test
lifei03 at gmail.com
Tue Jun 7 00:25:54 EDT 2005
What I am doing now is like this:
I got a number from my data. Say 122. Then I generate one
thansand numbers randomly according to similar criteria, Say, (7, 19,
45,199,......................). I wish to tell whether the result
122 is random distributed in the random dataset or it is small or
large. And I wish to caculate the p-vlaue as a cutoff since I have
thousands of such data(set).
Can you give me some suggestions? Thanks!
On 6/7/05, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> I don't think there is a bioperl module to do a t-test, but I could be
> wrong. But you might want to look here:
> Also, the open-source statistical package R (http://www.r-project.org) is
> quite good for such things and can be scripted or used from perl. What are
> you trying to do?
> ----- Original Message -----
> From: "Frank Lee" <lifei03 at gmail.com>
> To: <Bioperl-l at portal.open-bio.org>
> Sent: Monday, June 06, 2005 8:43 PM
> Subject: [Bioperl-l] how to use bioperl to do Z-scores test
> > Can anybody give me some ideas about how to use bioperl module to do
> > Z-scores test (Say, Wilcoxon).?
> > Thanks very much
> > --
> > Do not guess who I am. I am not Bush in BlackHouse
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
Do not guess who I am. I am not Bush in BlackHouse
More information about the Bioperl-l