[Bioperl-l] pubmed not used in Bio::Annotation::Reference if
medline is present
fernan at iib.unsam.edu.ar
Mon Jun 13 13:33:12 EDT 2005
+----[ Brian Osborne <brian_osborne at cognia.com> (13.Jun.2005 13:44):
| What is the $dataFile or id?
| Brian O.
OK, so your question prompted me to look again in GenBank,
because I'm using GenBank files that were downloaded some
time ago ... if you go to GenBank now, there are no MEDLINE
lines. But they are in my copy of the file (I'm using the
entry for accession number AI563039 as an example,
attached). So the bug is there. However, I don't know if
it's still relevant or worth to fix it, as it seems that
NCBI has pulled the MEDLINE line from the GenBank records.
Anyway, I'll have to download all my datasets again :(
LOCUS AI563039 530 bp mRNA linear EST 26-MAR-1999
DEFINITION TENS2196 T. cruzi epimastigote normalized cDNA Library Trypanosoma
cruzi cDNA clone 2196 5', mRNA sequence.
VERSION AI563039.1 GI:4521421
SOURCE Trypanosoma cruzi
ORGANISM Trypanosoma cruzi
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
REFERENCE 1 (bases 1 to 530)
AUTHORS Verdun,R.E., Di Paolo,N.C., Urmenyi,T.P., Rondinelli,E.,
Frasch,A.C.C. and Sanchez,D.O.
TITLE Gene discovery through expressed sequence tag sequencing in
JOURNAL Infect. Immun. 66 (11), 5393-5398 (1998)
COMMENT Contact: Sanchez D.O.
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