[Bioperl-l] pfam query

Sean Davis sdavis2 at mail.nih.gov
Thu Jun 16 10:40:03 EDT 2005

On Jun 16, 2005, at 5:11 AM, Juan Carlos Sanchez Ferrero wrote:

> hello,
> Does anyone know if it is possible to make a batch query using bioperl 
> to the pfam database ?
> i tried using Bio::Tools::WWW,
> but i am only able to get by the swisspfam accession number,
> and what i am interested is in making new queries....

I'm not sure what you are trying to do, but have you looked at ensembl 
mart?  You can access the MySQL database running the ensembl mart 
directly to query for genes with certain pfam domains or all pfam 
domains for given (or all genes).


More information about the Bioperl-l mailing list