[Bioperl-l] how to get entries from swiss-prot
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Tue Jun 21 05:56:51 EDT 2005
I just did an SRS all text search of swissprot at the EBI:
Query "(([swissprot-AllText:phage*] & [swissprot-AllText:organelle*]) | [swissprot-AllText:phage organelle*]) " found 1 entries
Even searching the whole of uniprot only throws up two entries.
So either SRS isn't working as expected, or you don't really have much of a problem here....
Failing that, you can use the Bio::DB::Query interface to search the protein database at the NCBI - doing a quick search, entrez throws out 9 results for phage organelle :-)
From: bioperl-l-bounces at portal.open-bio.org on behalf of Baoqiang Cao
Sent: Mon 20/06/2005 8:53 PM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] how to get entries from swiss-prot
I'd like to download all entries in swiss-prot with keywords "phage
organelle", any package I can use for this purpose? Thanks.
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