[Bioperl-l] help with parsing meme output

Nandita Mullapudi nandita at uga.edu
Thu Jun 23 15:16:01 EDT 2005

I am trying to use  Bio::Matrix::PSM::IO to parse meme output.
I need to extract the values corresponding to length of the
sequence, seq id, and motif id, start and significance/score.
I can get the last three using 

foreach my $instance (@{ $instances }) {
        my $start = $instance -> start;
        my $score = $instance -> score;

But i cannot find out how to get the seq id and seq length.
any ideas?

Graduate Student, Kissinger Lab.
Dept. of Genetics
UGA, Athens GA 30602 USA
lab phone: 706-542-6563
cell phone: 706-254-2444
Lab add: C318 Life Sciences

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