[Bioperl-l] Aggressive aggregation?

Aaron J. Mackey amackey at pcbi.upenn.edu
Wed Mar 9 14:04:12 EST 2005

I also recommend -span1 to ensure consistent HSP ordering and 
orientation ... FYI, DPS (part of AAT package) is another good option 
for fast intron-savvy alignments.


On Mar 9, 2005, at 1:42 PM, Jason Stajich wrote:

> I'd use WU-BLAST with the -links option
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697

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