[Bioperl-l] Aggressive aggregation?
Aaron J. Mackey
amackey at pcbi.upenn.edu
Wed Mar 9 14:04:12 EST 2005
I also recommend -span1 to ensure consistent HSP ordering and
orientation ... FYI, DPS (part of AAT package) is another good option
for fast intron-savvy alignments.
On Mar 9, 2005, at 1:42 PM, Jason Stajich wrote:
> I'd use WU-BLAST with the -links option
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania email: amackey at pcbi.upenn.edu
415 S. University Avenue office: 215-898-1205
Philadelphia, PA 19104-6017 fax: 215-746-6697
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