[Bioperl-l] cannot find path to blastall

James Gregory j1gregor at biomail.ucsd.edu
Tue Mar 15 16:07:46 EST 2005

I'm trying to set up a standalone blast and I'm getting an error message 
that says

MSG: cannot find path to blastall


my @params = (program => 'blastp',
               database => 'db.psq');
my $factory = Bio::Tools::Run::StandAloneBlast->new(@params);
my $path = '/path/to/blastall/';
$path = $factory->program_path($path);

my $blast_report = $factory->blastall($blast_seq);

any help would be appreciated.

James Gregory
University of California, San Diego
Department of Biological Sciences

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