[Bioperl-l] BLASTP

Minyi babyleo11 at yahoo.com.sg
Wed Mar 30 01:09:42 EST 2005

Hi all, 
         i've solved my problem. Thanks Paulo for asking me to check the webserver's log. The program can't work because i didn't have .ncbirc file. Thanks everyone! Cheers! 

Paulo Almeida <palmeida at igc.gulbenkian.pt> wrote:
Hi Minyi,

Have you tried running blastp on that file with perl, from the command line? When you run it with cgi, can you check the webserver's log to see if there are any errors, or send the error output to the browser (I think you can do it with CGI::Carp, but I haven't done that in a long time)?


On Tue, Mar 29, 2005 at 07:38:15AM +0100, Minyi wrote:
> hi all, 
> i'm doing a program to run blastp on cgi/perl. However, there's no hits found no matter what files i use. But when i run the program using standalone blast with the same files, there are hits found. Also, the same program can work for blastn on cgi/perl and standalone. The only thing it can't work is blastp on cgi/perl. Does anyone know what's the problem? Thank You!

Paulo Almeida
Instituto Gulbenkian de Ciencia
Apartado 14, 2781-901, Oeiras, PORTUGAL
tel +351 21 446 46 35
fax +351 21 440 79 70
Bioperl-l mailing list
Bioperl-l at portal.open-bio.org

" This is the beginning of a new day. You have been given this day to use as you will. You can waste it or use it for good. What you do today is important because you are exchanging a day of your life for it. When tomorrow comes, this day will be gone forever; in its place is something that you have left behind...let it be something good. "

Send instant messages to your online friends http://uk.messenger.yahoo.com 

More information about the Bioperl-l mailing list