[Bioperl-l] BLASTP

Brian Osborne brian_osborne at cognia.com
Wed Mar 30 08:12:59 EST 2005

Paulo and Minyi,

>error output to the browser (I think you can do it with CGI::Carp


use CGI::Carp qw(fatalsToBrowser);

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Paulo Almeida
Sent: Tuesday, March 29, 2005 9:53 AM
To: bioperl-l at portal.open-bio.org
Subject: Re: [Bioperl-l] BLASTP

Hi Minyi,

Have you tried running blastp on that file with perl, from the command line?
When you run it with cgi, can you check the webserver's log to see if there
are any errors, or send the error output to the browser (I think you can do
it with CGI::Carp, but I haven't done that in a long time)?


On Tue, Mar 29, 2005 at 07:38:15AM +0100, Minyi wrote:
> hi all,
>         i'm doing a program to run blastp on cgi/perl. However, there's no
hits found no matter what files i use. But when i run the program using
standalone blast with the same files, there are hits found. Also, the same
program can work for blastn on cgi/perl and standalone. The only thing it
can't work is blastp on cgi/perl. Does anyone know what's the problem? Thank

Paulo Almeida
Instituto Gulbenkian de Ciencia
Apartado 14, 2781-901, Oeiras, PORTUGAL
tel  +351 21 446 46 35
fax  +351 21 440 79 70
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