[Bioperl-l] BL2SEQ

Mane, Ajay (UMR-Student) amtd9 at umr.edu
Wed Mar 30 15:07:54 EST 2005

I have mailed earlier to this group, but there was no response. I want to run perl from a command line to get the 
results of NCBI bl2seq tool, which aligns two sequences. Which are the modules to be used ? A reply atleast this time
would be great.
- Ajay


From: bioperl-l-bounces at portal.open-bio.org on behalf of Madeleine Lemieux
Sent: Wed 3/30/2005 11:26 AM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] BLASTP


Are you sure both versions of Blast are getting the same e-val? The
RemoteBlast.pm default is 1e-3 but Perl.pm sets it at 1e-10. I'm not
sure what the standalone value is.


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