[Bioperl-l] bioperl - swissprot GN lines

Brian Osborne brian_osborne at cognia.com
Wed Nov 2 12:43:58 EST 2005


Most of the data in a Swissprot file, including the GN lines, is found in
Annotation objects. This particular one has a tag of 'gene_name'. Take a
look at the Feature-Annotation HOWTO for an explanation of how to extract
these Annotations (http://bioperl.org/HOWTOs).

Brian O.

On 11/2/05 11:22 AM, "Amanda O'Reilly" <ajo11 at mole.bio.cam.ac.uk> wrote:

> Hello, I've found your bioperl posting
> [Bioperl-l] SwissProt/UniProt GN line format changed
> <http://bioperl.org/pipermail/bioperl-l/2004-July/016493.html>
> in which you say
> /I added the capability to parse this and a test to the main trunk.
> /I would be very grateful if you could let me know how I can access
> this capability.
> Sorry if I'm missing something obvious!
> Many thanks for any help,
> Amanda O'Reilly.
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