[Bioperl-l] Failed to load tigr xml files through Bio::Seq::tigr
kun.he at yale.edu
Wed Nov 2 17:36:35 EST 2005
I have just tried to use the Bio::Seq::tigr module (BioPerl 1.5.1) to
import information from TIGR Rice version 3 XML format pseudochromosome
data, but it always failed on the loading (initiating) procedure.
my $io = Bio::SeqIO->new(-file => "<$file", -format => "tigr" );
There are a lot kinds of errors thrown out, based on different XML
files. Attached is a sample xml from tigr, who can kindly help me to try
if you can load it by the tigr.pm module? Thanks a lot!
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