[Bioperl-l] Location mapping question
jason.stajich at duke.edu
Wed Nov 9 13:36:56 EST 2005
To see it in action: here is a script which maps protein domain/FASTP
hits back to the Genome.
The downside is this can be a little slow.
On Nov 9, 2005, at 1:17 PM, Sean Davis wrote:
> I think I have seen code to do this kind of thing--hence this
> email--but I
> may be mistaken. I have oligo sequences mapped to mRNAs by blat
> and have
> blat alignments to the genome. Is there a way to quickly align the
> to the genome given this information using a bioperl module. (Like
> I said,
> I just can't seem to find it).
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> Bioperl-l at portal.open-bio.org
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