[Bioperl-l] Problem with bioperl installation
slimick at warren.upb.pitt.edu
Wed Nov 23 12:49:50 EST 2005
I tried working with the Swedish site, but I got
confused by all the files there that I returned to
the CPAN installation.
The final lines of a failed install:
All tests successful, 1 test and 1 subtest dropped
/usr/bin/make -- OK
Running make install
mkdir /usr/bin/perl: File exists at
/usr/local/lib/perl5/5.8.7/ExtUtils/Install.pm line 112
make *** [pure_site_install] Error 17
/usr/bin/make isntall -- Not OK
and back to the prompt.
Earlier in the tests, one was failed with the message
Can't locate HTTP/Headers.pm in @INC(.....)
Thanks in advance.
slimick at pitt.edu
On Sun, 20 Nov 2005, Barry Moore wrote:
> I doesn't sound like your installation succeeded. Did you get errors
> with make install? Do you know where locate perl modules are installed
> on yours system (/usr/lib/perl5/site_perl/5.8.5/ on my system)? If so
> is there a Bio directory there? Can you give us more details on your
> install process?
> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org
> [mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of John Slimick
> Sent: Thursday, November 17, 2005 1:43 PM
> To: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Problem with bioperl installation
> I have tried to install Bioperl for use in
> one of my classes, but I have found a roadblock.
> I have installed current Bioperl by using
> the CPAN route and also using the "make"
> approach. This is on a RH 9.0 system.
> I get the same error on either installation.
> Here is the file I wished to test (from the Bioperl
> #!/usr/bin/perl -w
> use strict;
> use Bio::Perl;
> $seq_object = get_sequence('swiss',"ROA_HUMAN");
> I get the following message:
> Can't locate Bio/Perl.pm in @INC( @INC contains ,,long file list)
> When I do:
> $ find / -name Perl.pm -print
> as _root_ all I get is a single hit
> Any thoughts?
> Thanks in advance.
> john slimick
> slimick at pitt.edu
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
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