[Bioperl-l] StandAloneBlast.pm - rpsblast support?
torsten.seemann at infotech.monash.edu.au
Thu Nov 24 22:22:23 EST 2005
Hello Peter & BioPerl team,
Are there any plans to add NCBI 'rpsblast' support to StandAloneBlast.pm ?
The binary is called 'rpsblast'.
The command line options are a similar to 'blastall' and 'blastpgp'.
The databases are often stored in $BLASTDB/CDD/ but don't have to be.
I've looked at StandAloneBlast.pm and I think I could maybe patch in support
but thought I should check with the experts who might have advice on any
refactoring or re-use of existing code.
Thanks for any help,
Torsten Seemann <torsten.seemann at infotech.monash.edu.au>
Victorian Bioinformatics Consortium
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