[Bioperl-l] Please help

Brian Osborne brian_osborne at cognia.com
Thu Oct 13 21:59:44 EDT 2005


You need to study Bioperl's documentation. Take a look at relevant HOWTOs
(Beginners, SeqIO, SearchIO perhaps). Also, install the bioperl-run package
and look at the Bio::Tools::Run::Clustalw module.

Brian O.

On 10/12/05 3:48 PM, "Angshu Kar" <angshu96 at gmail.com> wrote:

> Hi ,
> I'm completely new to perl. I'm have to work in biology using perl,
> postgresql (as database) and clustalw(as the alignment
> tool). I'm stating my problem briefly:
> In the postgresql db the data is clustered using complete linkage
> clustering. I've to connect to that db, fetch those data, feed it to
> the multiple alignment tool, run it and show the results.Again,
> feed those alignments into a scoring tool and show the results in
> form of a histogram.All these needs to be automated using perl.
> I've installed bio-perl but can't get how to write code using it.
> I'll be obliged if you help me with this by providing the idea of how
> to feed the db data (in fasta format) into clustalw.
> Thanks,
> Angshu
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