[Bioperl-l] About the location of the microRNAs
sdavis2 at mail.nih.gov
Wed Sep 21 17:24:19 EDT 2005
On 9/21/05 4:40 PM, "Alex Zhang" <mayagao1999 at yahoo.com> wrote:
> Hello! This is Alex.
> My current ongoing research project is about the discovery of the expression
> of all
> human microRNAs.
> In particular, I need to gain the information about the location of each Homo
> microRNA on the chromosomes. For example, I need the information like:
> Id Chromosome Start End
> hsa-mir-200b 1 1142407 1142501
> hsa-mir-200a 1 1143166 1143255
> hsa-mir-429 1 1144308 1144390
> hsa-mir-34a 1 9145993 9146102
> hsa-mir-30e 1 40889120 40889211
> Is there a convenient way to get this automatically instead of manually?
Go to the UCSC table browser and just grab the miRNA (hg16) or sno/miRNA
(hg17) table. The link is here:
Alternatively, you can download the mysql table from them, as well.
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