[Bioperl-l] a stupid question
golharam at umdnj.edu
Tue Sep 27 08:25:58 EDT 2005
I have code that does this for Accession #. If you have the Accession #
(I assume that's what you mean by GeneID), then the script will get the
GenBank entry and extract the CDS. Let me know if that's what you are
looking for, and I'll post it here.
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of xuying
Sent: Tuesday, September 27, 2005 3:20 AM
Subject: [Bioperl-l] a stupid question
I have a file containing wanted genes' GeneIDs. How can I map
this GeneID to its Fasta sequence (genomic sequence of the gene)?
Although There is position and contig information in the gene2accession
file... Is there any simple way? Thanks!
xuying at sibs.ac.cn
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