[Bioperl-l] a stupid question

xuying xuying at sibs.ac.cn
Wed Sep 28 00:06:25 EDT 2005

Hi Rayn:
I have many files containing GeneIDs (entrezgene uid) such as the attached file. And I want to extract the full gene sequence from NCBI, not just CDS. But you script should be helpful. Would you like to share your code here? Thanks! 


======= 2005-09-27 20:25:58 ÄúÔÚÀ´ÐÅÖÐдµÀ£º=======

>I have code that does this for Accession #.  If you have the Accession #
>(I assume that's what you mean by GeneID), then  the script will get the
>GenBank entry and extract the CDS.  Let me know if that's what you are
>looking for, and I'll post it here.
>-----Original Message-----
>From: bioperl-l-bounces at portal.open-bio.org
>[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of xuying
>Sent: Tuesday, September 27, 2005 3:20 AM
>To: bioperl-l
>Subject: [Bioperl-l] a stupid question
>Dear All:
>        I have a file containing wanted genes' GeneIDs. How can I map
>this GeneID to its Fasta sequence (genomic sequence of the gene)?
>Although There is position and contig information in the gene2accession
>file... Is there any simple way? Thanks!
>Best Regards!
>¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡xuying at sibs.ac.cn
>Bioperl-l mailing list
>Bioperl-l at portal.open-bio.org

= = = = = = = = = = = = = = = = = = = =

¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡xuying at sibs.ac.cn

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