[Bioperl-l] FreeBSD ports
hartzell at kestrel.alerce.com
Thu Sep 29 13:02:09 EDT 2005
Mauricio Herrera Cuadra writes:
> Due to the recent threads about the FreeBSD ports, I've come up with
> some questions:
> - Fernán: are you working only on p5-bioperl? (I've sent XML::DOM::XPath
> a few weeks ago, so you have one less dependency to worry about ;) )
> - George: are you planning to send/maintain p5-bioperl-run and
> p5-bioperl-devel (and their respective dependencies)?
> - Anyone else is preparing ports for FreeBSD?
> I'm working on p5-bioperl-ext (and its dependencies). I hope to have it
> ready for the 1.6.0 release.
I have ports and/or updates for p5-bioperl-devel and p5-bioperl-run
(been using them for a while now, updating for 1.5.1), tidying up one
for exonerate (making sure it passes everything w/ assertions
enabled), fasta3 (update), and first drafts for mdust and seg
(pains-in-the-ass because of how the src files are made available on
I have an almost working -ext, except that it was splatting it's libs
in odd places and I was in a hurry, so I just put them where they
belonged by hand.
Depending on how stable the location of the "release candidate" is for
wise 2.2.3-rc7 (in other words, if Ewan doesn't object), I'll roll up
a wise-devel port to support p5-bioperl-run.
I'll send all of this in as PR's and am happy to maintain them as
I'm happy to build others if folks suggest them and as time allows.
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