[Bioperl-l] possible bug printing GenBank feature qualfiers

Chris Fields cjfields at uiuc.edu
Sat Apr 1 10:47:52 EST 2006


Removed Scott's line from Bio::SeqIO::genbank in CVS (reverted back  
to the previous version); it's much simpler that way and we avoid an  
extra method call.  Sorry about all the confusion here; I was worried  
that the parsing issue I was seeing about the feature flag had  
something to do with Scott's bug when they were completely unrelated.

Chris

On Apr 1, 2006, at 3:34 AM, Hilmar Lapp wrote:

>
> On Mar 31, 2006, at 8:26 PM, Chris Fields wrote:
>
>> Since the problem seems to be solved and both fixes (Scott's and
>> Heikki's) are redundant and essentially get the same results, one of
>> them should be rolled back.
>
> Please don't leave the line
>
> 	$value = $value->{"value"};
>
> Either remove it (because the problem needs to either be 'fixed' in  
> all
> writers, or at the root), or if you want to leave this construct in,
> protect it with a conditional and use the method-based access as I  
> sent
> an example before.
>
> 	-hilmar
> -- 
> ----------------------------------------------------------
> : Hilmar Lapp -:- San Diego, CA -:- hlapp at gmx dot net :
> ----------------------------------------------------------
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





More information about the Bioperl-l mailing list