[Bioperl-l] biosql-schema CVS problems

Chris Fields cjfields at uiuc.edu
Tue Apr 4 11:08:32 EDT 2006


No problem (I can just download the tarball, I don't need r/w permissions
for the schema).  I didn't have an issue when checking out from the old cvs
server; it's been a while so I may be wrong.  Looks like Chris D. figured it
out though.  Thanks!

Chris (F.)

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 


> -----Original Message-----
> From: Jason Stajich [mailto:jason.stajich at duke.edu]
> Sent: Tuesday, April 04, 2006 10:02 AM
> To: Chris Fields
> Cc: bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] biosql-schema CVS problems
> 
> It is a symlink to /home/repository/biosql because this is a shared
> project, but you need to be in the biosql group though to checkout
> with read+write permissions.
> 
> An email to the helpdesk will get this straightened out.
> 
> We'll have to think more about how we want to handle this in the
> future in terms of granting permissions to the schema for r/w.
> 
> 
> -jason
> On Apr 4, 2006, at 10:15 AM, Chris Fields wrote:
> 
> > I'm having problems checking out biosql-schema from CVS using my
> > developer
> > account on the new CVS server (dev.open-bio.org).  I'm currently using
> > TortoiseCVS and I am able to checkout all other packages w/o
> > problems (core,
> > run, db, etc), so I know everything is set up correctly and works.
> > When I
> > try 'biosql-schema' or 'schema' I get this:
> >
> > In C:\Perl\src\bioperl: "C:\Program Files\TortoiseCVS\cvs.exe" "-q"
> > "--lf"
> > "checkout" "-P" "schema"
> > CVSROOT=:ext:cjfields at dev.open-bio.org:/home/repository/bioperl
> >
> > cvs checkout: failed to create lock directory for
> > `/home/repository/bioperl/biosql-schema'
> > (/home/repository/bioperl/biosql-schema/#cvs.lock): Permission denied
> > cvs checkout: failed to obtain dir lock in repository
> > `/home/repository/bioperl/biosql-schema'
> > cvs [checkout aborted]: read lock failed - giving up
> > cvs.exe checkout: in directory .:
> > cvs.exe checkout: cannot open CVS/Entries for reading: No such file or
> > directory
> >
> > Error, CVS operation failed
> >
> >
> >
> > This didn't happen with the old cvs server.  Any ideas?
> >
> >
> > Christopher Fields
> > Postdoctoral Researcher - Switzer Lab
> > Dept. of Biochemistry
> > University of Illinois Urbana-Champaign
> >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> --
> Jason Stajich
> Duke University
> http://www.duke.edu/~jes12




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