[Bioperl-l] nt frequencies at 4 fold degenerate sites

Nathan S. Haigh n.haigh at sheffield.ac.uk
Thu Apr 6 10:28:45 EDT 2006


A colleague would like to calculate the nt frequencies of 4 fold degenerate
sites of coding regions in a GenBank file. Does anyone know if there might
ba a script that can do this, or something similar that I might be able to
rip apart in order to do accomplish this? Any pointers to particular modules
that I might find useful for doing this would be good - I've been told not
to spend too much time on this.

 

Cheers

Nathan

 

----------------------------------

Nathan S. Haigh

Bioinformatics PostDoctoral Research Associate

 

Room B2 211

Department of Animal and Plant Sciences

University of Sheffield

Western Bank

Sheffield

S10 2TN

 

Tel: +44 (0)114 22 20112

Mob: +44 (0)7742 533 569

Fax: +44 (0)114 22 20002

 

---
avast! Antivirus: Outbound message clean.
Virus Database (VPS): 0614-0, 03/04/2006
Tested on: 06/04/2006 15:28:43
avast! - copyright (c) 1988-2006 ALWIL Software.
http://www.avast.com



  
-------------- next part --------------
A non-text attachment was scrubbed...
Name: n.haigh at sheffield.ac.uk.vcf
Type: text/x-vcard
Size: 811 bytes
Desc: not available
Url : http://lists.open-bio.org/pipermail/bioperl-l/attachments/20060406/026fbfbb/attachment.vcf 


More information about the Bioperl-l mailing list