[Bioperl-l] Minor Bio::Tools::Run::Alignment::Muscle update

Jordan Mark Swanson swansonj at email.arizona.edu
Fri Apr 7 02:12:04 EDT 2006


The muscle alignment program accepts a variable for a gap opening 
penalty.  In order to allow the Muscle bioperl-run module accept this 
argument, one can add
GAPOPEN to the @MUSCLE_PARAMS array on line 114 of  
Bio/Tools/Run/Alignment/Muscle.pm  . 

-- 
  Jordan Swanson
  swansonj at email.arizona.edu
  Genetics Graduate Interdisciplinary Program
  University of Arizona



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