[Bioperl-l] Minor Bio::Tools::Run::Alignment::Muscle update

Albert Vilella avilella at gmail.com
Fri Apr 7 13:11:30 EDT 2006

added. haven't tested at all.


On Thu, 2006-04-06 at 23:12 -0700, Jordan Mark Swanson wrote:
> The muscle alignment program accepts a variable for a gap opening 
> penalty.  In order to allow the Muscle bioperl-run module accept this 
> argument, one can add
> GAPOPEN to the @MUSCLE_PARAMS array on line 114 of  
> Bio/Tools/Run/Alignment/Muscle.pm  . 

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