[Bioperl-l] retrieving top_SeqFeatures for RefSeq proteins fails

Brian Osborne osborne1 at optonline.net
Wed Apr 12 10:08:59 EDT 2006


Eleni,

If you have sufficient space you can install Bioperl in your home directory,
the necessary steps are explained in the INSTALL file (
http://bioperl.open-bio.org/SRC/bioperl-live/INSTALL).

Brian O.


On 4/12/06 4:09 AM, "Eleni Rapsomaniki" <e.rapsomaniki at mail.cryst.bbk.ac.uk>
wrote:

> Hi again,
> 
> Thank you for your replies. It will sound crazy but the same code,ie.
> my $factory = Bio::DB::GenBank->new(-no_redirect => 1);
> print my $seq = $factory->get_Seq_by_acc('NM_001008292');
> 
> used to work 3-4 days ago, then stopped working 2 days ago (despite updating
> to
> 1.5) and today (no more updates or changes!) it works again! Could be because
> I
> never logged off in between the bioperl updates..
> I'll try to persuade our administrator to update to CVs (life is harder
> without
> admin rights..)
> 
> Thank you so much for your help.
> Eleni
> 
> 
> 
> 
> ----------------------------------------------------------------
> This message was sent using IMP, the Internet Messaging Program.
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l




More information about the Bioperl-l mailing list