[Bioperl-l] Genbank parsing using Bioperl
prabubio at gmail.com
Fri Apr 21 09:24:56 EDT 2006
I feel sorry for making a small mistake in my earlier mail
I am not actually using Genbank releases, But Refseq Genome build gbk files
of NCBI (ftp.ncbi.nih.gov/genomes/)
Those files are genbank formatted and contains Refseq IDs.
I am a novice bioperl user, trying to parse Genbank files with Bioperl
modules to get some specific features and details.
Anyone please tell me, whether we can retrive a Gene, its Transcript ID and
its Protein ID from the Genbank file.
I mainly need to extract with one to one relationship between TranscriptID
and Protein ID.
I was trying this. I was able to take these details if the gene is not
If a gene contains multiple mRNA/CDS feature, I am not able to build the
relationship between Transcript and its Protein.
Kindly help me to find out whether this is possible in Bioperl.
Thanks in advance,
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