[Bioperl-l] invalid species name error handling

Mauricio Herrera Cuadra arareko at campus.iztacala.unam.mx
Mon Apr 24 10:17:51 EDT 2006

Maybe I can help you. Can you post your script?


Stefano Ghignone wrote:
> Hi all.
> I have a problem with a script that extracts the species name from GenPept flat files, querying the database with a list of acc.no. When it encounters an invalid species name (e.g. Cryptococcus neoformans var. neoformans JEC21), it exits definitely with an exception error. I don't know how to handle this error, and make the script pass to the next value. I suppose I have to use Bio::Root::Exception and Bio::Root::Root but I don't know how to start.
> Who can help me with some hints?
> stefano
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arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM

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