[Bioperl-l] Installation problem

Reena Yadav reenayadav at gmail.com
Tue Apr 25 04:48:45 EDT 2006

Linux: Bioperl was installed using root privileges.
Tried using the first script, from:
Internet is connected and is accessible.
 I got the following reply.

------------- EXCEPTION  -------------
MSG: WebDBSeqI Request Error:
501 Protocol scheme 'webproxyap1.inbg.astrazeneca.net' is not supported
Content-Type: text/plain
Client-Date: Tue, 25 Apr 2006 08:24:19 GMT
Client-Warning: Internal response

501 Protocol scheme 'webproxyap1.inbg.astrazeneca.net' is not supported

STACK Bio::DB::WebDBSeqI::_stream_request
STACK Bio::DB::WebDBSeqI::get_seq_stream
STACK Bio::DB::WebDBSeqI::get_Stream_by_id
STACK Bio::DB::WebDBSeqI::get_Seq_by_id
STACK Bio::Perl::get_sequence /usr/lib/perl5/site_perl/5.8.5/Bio/Perl.pm:511
STACK toplevel bp.pl:7


-------------------- WARNING ---------------------
MSG: id (ROA1_HUMAN) does not exist
You have a non object [] passed to write_sequence. It maybe that you want to
use new_sequence to make this string into a sequence object? at
/usr/lib/perl5/site_perl/5.8.5/Bio/Perl.pm line 283
        Bio::Perl::write_sequence('>roa1.fasta', 'fasta', 'undef') called at
bp.pl line 9

Win:    activestate of perl was downloaded and installed.
then in ppm..

ppm> rep add Bioperl http://bioperl.org/DIST

ppm> rep add Kobes http://theoryx5.uwinnipeg.ca/ppms

ppm> rep add Bribes http://www.Bribes.org/perl/ppm

ppm> search Bioperl
searching in active Repositories.
no matches for 'Bioperl' ; see 'help search'

Where am not going wrong..please point out the experiences.
Reena Yadav.

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