[Bioperl-l] $hit_object->frac_aligned_hit/$hit_object->frac_aligned_query

Hilmar Lapp hlapp at gmx.net
Wed Aug 2 08:32:35 EDT 2006


On Aug 2, 2006, at 7:23 AM, Sendu Bala wrote:

> It should be noted that all frac_* statistics and probably others from
> hit objects have had a high chance of being wrong in the past, and
> frac_identical and frac_conserved can still be very wrong*. It  
> would be
> a good idea if someone were to make these methods return slightly more
> sane numbers.
>
> [*] which is to say, more wrong than you might reasonably expect,  
> given
> the limitations with gapped or alignment-free blasts

Can you elaborate? Specifically, can you put in tests that show the  
wrong results?

	-hilmar
-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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