[Bioperl-l] Pattern finding and mismatches

staffa staffa at niehs.nih.gov
Thu Aug 3 12:53:04 EDT 2006


I have seen bioperl modules for finding restriction sites and fragment 
lengths, and one could create his own pattern to search for,
but is there anything like GCG's findpatterns that would allow me to 
search for a 21bp pattern but allow 2 mismatches anywhere?


Nick Staffa
Telephone: 919-316-4569  (NIEHS: 6-4569)
Scientific Computing Support Group
NIEHS Information Technology Support Services Contract
(Science Task Monitor: Jack L. Field( field1 at niehs.nih.gov )
National Institute of Environmental Health Sciences
National Institutes of Health
Research Triangle Park, North Carolina
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