[Bioperl-l] t/entrezgene, t/protgraph and t/FeatureIO

Chris Fields cjfields at uiuc.edu
Mon Aug 7 10:44:25 EDT 2006


It's something to do with perl 5.8.  I think this is the version  
where the pseudohash deprecation warning was added.  The only problem  
I see here is a potential compatability issue with entrezgene.pm and  
the next major perl release, which will not run code which it thinks  
contains pseudohashes.

I ran into a similar issue not too long ago when dereferencing  
something and perl complaining about pseudohashes.  Can't remember  
what I did to make it stop complaining, but it had something to do  
with the way I dereferenced the data...

Chris

On Aug 7, 2006, at 9:08 AM, Brian Osborne wrote:

> Chris and Sendu,
>
> Right. The author of entrezgene.pm is _not_ using pseudohashes but  
> perl
> thinks they're being used. I suppose one could hack something here  
> but it's
> not entrezgene.pm that's at fault.
>
> Brian O.
>
>
> On 8/7/06 9:04 AM, "Chris Fields" <cjfields at uiuc.edu> wrote:
>
>> Brian already knows about the 'pseudohash' issue
>
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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