[Bioperl-l] Database Retrieval

Hilmar Lapp hlapp at gmx.net
Mon Aug 7 12:46:27 EDT 2006


On Aug 7, 2006, at 10:41 AM, Sean Davis wrote:

>> Also, I would also like to know something about the expression of a
>> particular gene of interest. e.g. ba querying the Novartis Gene Atlas
>> (http://symatlas.gnf.org/SymAtlas/). Is there a module for handling
>> submissions and retrieving results of this sort?
>
> No, but, again, UCSC hosts these data and they have nice query  
> tools, a
> publicly-accessible MySQL database containing the information, and
> downloadable tables for the data.

They actually don't host all of them, and not necessarily the latest  
versions as samples do get added, also to the public datasets.

Having said that, you may be just fine with the version that UCSC hosts.

	-hilmar
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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