[Bioperl-l] Parsing Clustalw alignment

Amanda n/a amanda.na at gmail.com
Mon Aug 7 14:31:36 EDT 2006


Hi,
Has anyone had luck in using Clustalw.pm to parse through clustalw .aln
and/or output files? Specifically, I'm looking to search for high scoring
alignments between specific pairs of sequences. If found, I then need to
extract the two sequence ids, sequences, alignment score and positions. If
anyone has had experience with this or knows of a resource/doc that runs
through this, I would be grateful if you would not mind sharing.
Thanks


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