[Bioperl-l] Parsing output with Clustalw.pm

Amanda n/a amanda.na at gmail.com
Mon Aug 7 14:35:26 EDT 2006


Hi,
Has anyone had luck in using Clustalw.pm <http://clustalw.pm/> to parse
through clustalw .aln and/or output files? Specifically, I'm looking to
search for high scoring alignments between specific pairs of sequences. If
found, I then need to extract the two sequence ids, sequences, alignment
score and positions. If anyone has had experience with this or knows of a
resource/doc that runs through this, I would be grateful if you would not
mind sharing.
Thanks


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