[Bioperl-l] A blast result file parsing exception

Brian Osborne osborne1 at optonline.net
Tue Aug 8 09:38:15 EDT 2006


Deepak,

What Bioperl version are you using?

Brian O.


On 8/8/06 12:10 AM, "deepak shingan" <deep_ans at yahoo.com> wrote:

> Hi All,
>   I have a bio-perl parser which parse a blast result file. It works fine for
> some files but for some files it throws following exception
>    
>   ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: Can't get identical or conserved data: no data.
> STACK: Error::throw
> STACK: Bio::Root::Root::throw
> /usr/lib/perl5/site_perl/5.8.5/Bio/Root/Root.pm:328
> STACK: Bio::Search::Hit::GenericHit::matches
> /usr/lib/perl5/site_perl/5.8.5/Bio/Search/Hit/GenericHit.pm:852
> STACK: parserMethod.pl:56
> -----------------------------------------------------------
> I am sending the parser code and a temporary blast file on which this
> exception is generated .
>   Please throw some light and please help me.
>    
>   Thanks
>   Deepak
> 
> 
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