[Bioperl-l] SearchIO speed up
cjfields at uiuc.edu
Thu Aug 10 13:18:08 EDT 2006
On Aug 10, 2006, at 11:41 AM, Sean Davis wrote:
> On 8/10/06 12:04 PM, "Sendu Bala" <bix at sendu.me.uk> wrote:
>> That's what I've done actually, which is why performance varies
>> 5x and 1.5x (lower performance when the instantiation is forced).
>> But, things like 'parsing and output' do need to force the
>> unless, say, an output module knew about the hash structure of the
>> stored inside a Result object. Which is too horrible a situation to
>> comprehend. :O
> I was just asking--I have no idea what is possible. But what you have
> already accomplished is QUITE impressive!
Agreed! I say get the code out there (CVS, Bugzilla) so people can
start testing, coding, make suggestions, etc.
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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