[Bioperl-l] No space between parameters in codeml output.

Chris Fields cjfields at uiuc.edu
Thu Aug 17 14:00:00 EDT 2006


I'm working on it now.  Thanks!

Chris

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Seiji Kumagai
> Sent: Thursday, August 17, 2006 12:35 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] No space between parameters in codeml output.
> 
> Hi,
> 
> I have just reported a bug in PAML.pm (#2080) with patches. They solve an
> issue that parsing fails if codeml reported omega (dN/dS) in NSsite
> results without \s+ between two estimates like '0.12345678.90123'. The
> patches also include a fix to a cosmetic issue I introduced in previous
> report (#2054 or #2055 can't remember).
> 
> Would someone care to take a look?
> 
> Thanks
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