[Bioperl-l] regexp / protein database

Chris Fields cjfields at uiuc.edu
Mon Aug 28 21:40:49 EDT 2006


Hubert,

This is answered in the FAQ.  You might also check the mail list  
archives via gmane.

http://www.bioperl.org/wiki/FAQ#Utilities

http://search.gmane.org/? 
query=&email=&group=gmane.comp.lang.perl.bio.general&sort=relevance&DEFA 
ULTOP=and&query=

Chris

On Aug 28, 2006, at 8:15 PM, Hubert Prielinger wrote:

> Hi,
> Is it possible to scan a protein database (e.g: swissprot..) directly
> with regular expression. I have taken a look at  
> Bio::Tools::SeqPattern,
> but it seems it isn't a proper solution.
> like it is done on that webpage: http://scansite.mit.edu/ 
> dbsequence_reg.html
>
> thanks
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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