[Bioperl-l] Accesssing local database

Brian Osborne osborne1 at optonline.net
Wed Aug 30 12:39:39 EDT 2006


Kamesh,

I'd suggest that you start by reading the Beginner's HOWTO:

http://www.bioperl.org/wiki/HOWTO:Beginners

The relevant section is Indexing for Fast Retrieval.


Brian O.


On 8/30/06 12:18 PM, "kamesh narasimhan" <nkamesh at gmail.com> wrote:

> Hi,
> 
> I am new to programming world....and now i have this daunting task at
> hand.....
> 
> I have a text file in which there is a list of accession numbers one in each
> line. I would like to know as to how I can go about retrieving the
> sequences, that correspond to these set of accession numbers from a local
> protein database (fasta format) . Which bioperl module (currently available)
> is suited for this??......or do I have to write my own modules....
> 
> thanks a lot....
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