[Bioperl-l] Memory requirements for conversion from embl to genbank
bix at sendu.me.uk
Thu Aug 31 11:50:45 EDT 2006
Martin MOKREJŠ wrote:
> I observe the same. Testcase here. Please push it into tescases.
> It will be helpful in the future when the parser should cope with the
> two /note feature lines.
Well the cause of the hang is the multiple species defined for one
sequence. Is that valid? Desired? Should the fix be to somehow store and
be able to output multiple species again, or to ignore all but one of
the species? You have two sequences with this problem in the large file
If this has 'worked' for you before it is probably because a completely
meaningless composite species classification was generated. The new
taxonomy system 'ensures' that the taxonomic data parsed is sane enough
to be output correctly again.
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