[Bioperl-l] need help with phrap parser

neeti somaiya neetisomaiya at gmail.com
Fri Dec 8 05:21:50 EST 2006


Can anyone point me to a Phrap parser which parses the ace file to extract
what reads make up each contig (eg. read_a and read_b make contig1; read_d
read_e and read_z make contig2, and other information of the reads (like
whether the read is complemented or not with respect to the contig, what
region of the contig does each read contribute etc), basically the AF and BS
lines of the ACE output.

-- 
-Neeti
Even my blood says, B positive


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