[Bioperl-l] need help with phrap parser

Chris Fields cjfields at uiuc.edu
Fri Dec 8 10:31:19 EST 2006


...
> But then you would need to parse the fields of interest. You get the 
> position/strand in the contig from AF, then you get the length of the 
> read from RD.
> 
> There does look like there is a part of bioperl that meant to perform 
> this task--including Bio::Assembly::IO::ace but it looks like it was 
> started, but never completed.

...and if anyone wants to chip in and work on it, let us know!   The various
Bio::Assembly modules are one of many areas that needs some updating.

chris



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