[Bioperl-l] need help with phrap parser
cjfields at uiuc.edu
Fri Dec 8 10:31:19 EST 2006
> But then you would need to parse the fields of interest. You get the
> position/strand in the contig from AF, then you get the length of the
> read from RD.
> There does look like there is a part of bioperl that meant to perform
> this task--including Bio::Assembly::IO::ace but it looks like it was
> started, but never completed.
...and if anyone wants to chip in and work on it, let us know! The various
Bio::Assembly modules are one of many areas that needs some updating.
More information about the Bioperl-l