[Bioperl-l] Driver program for PestFind.pm
cjfields at uiuc.edu
Sun Dec 10 13:55:16 EST 2006
On Dec 10, 2006, at 4:00 AM, synapse wrote:
> Dear All,
> I apologize in advance for my almost total lack of knowledge of
> perl as a
> programming language.
> I need to use PestFind program, part of the biop_run package of
> bioperl. My
> understanding is that I will need a simple wrapper program that
> will read
> arguments from the command line, and pass them to that module.
PestFind is part of the EMBOSS suite of programs:
The PestFind module in bioperl-run is actually used via Pise.
> - Is there such program available that I can just use?
> - Does anyone know if pestfind can work on multiple sequence
> files (in fasta
> format), or does it only process single sequence files?
> Thanks a lot for the feedback.
No idea there, but the EMBOSS docs should tell you.
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