[Bioperl-l] BLAST reports

Keith Anthony Boroevich kaboroev at sfu.ca
Tue Dec 12 12:14:39 EST 2006


Hi everyone,

I would like to manipulate my blast results with bioperl but would also
like to have the html output of the blast.  What would be the best way
of going about this, as I don't see any write functions in any of the
blast modules I have looked at.  Would it be better to create my own
html layout from the blast data then attempt to recover this from bioperl?

keith

p.s. - does anyone know what the most informative blast "alignment view"
output is? xml i suppose?

-- 
 ><)))°> -cGRASP- <°(((><
 Keith Anthony Boroevich
 Davidson Lab
 Dept of Molecular Biology
 Simon Fraser University
 Tel: 604-268-7276



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