[Bioperl-l] problem in running needle

Boris Steipe boris.steipe at utoronto.ca
Tue Dec 12 16:26:14 EST 2006

Looks like a memory allocation problem. Your whole sequence is in one  
single line, throwing a few linebreaks in there every 80th character  
or so will probably do the trick.


On 12-Dec-06, at 7:09 AM, neeti somaiya wrote:

> I am trying to run needle for the attached two sequence files, on a  
> linux
> machine. It says "Uncaught exception:  Assertion failed, raised at  
> ajmem.c
> :187".
> Can anyone tell me what this could be coz of?
> -- 
> -Neeti
> Even my blood says, B positive
> <SEQ_1.REF>
> <seq_of_contig11>
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