[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking

Matthew Vaughn vaughn at cshl.edu
Thu Dec 14 14:09:34 EST 2006


Dear all,

I'm trying to bring some of my code into compliance with the BioPerl  
1.5.2 and am running into some design decisions that I am unclear on.  
Can I ask why Bio::SeqFeature::Annotated enforces mandatory checking  
of the 'type' against SOFA? It seems to me that this should be  
optional behavior as is the case with the Bio::FeatureIO family. I'd  
be happy to write the patch if there is any agreement with me on this  
case.

Thanks,

Matt

--
Matthew W. Vaughn, Ph.D.
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724

phone: (516) 367-8469


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