[Bioperl-l] Problems with EMBL entries and fasta IDs?
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Tue Dec 19 07:20:56 EST 2006
I'm using bioperl-1.4. I did do a google search fro this but couldn't
find anything. If this is fixed in 1.5.2 then forgive me.
I'm getting a warning:
MSG: No whitespace allowed in FASTA ID [unknown id]
When trying to convert from EMBL format to fasta. The offending
sequence is CK234114:
ID CK234114; SV 1; linear; mRNA; EST; VRT; 244 BP.
DT 03-MAR-2004 (Rel. 79, Created)
DT 03-MAR-2004 (Rel. 79, Last updated, Version 1)
DE SB010002000A01 JUWNL1 Normalized Zebra Finch Juvenile Telencephalon
DE Library SB01 Taeniopygia guttata cDNA clone SB010002000A01 5', mRNA
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